Splice site prediction for multiple sequences
ASSP predicts putative alternative exon isoform, cryptic, and constitutive
splice sites of internal (coding) exons. Skipped splice sites are not
differentiated from constitutive sites. Non-canonical splice sites are
not detected. Alternative splicing is predicted based on the DNA/RNA sequence
information only. For splice site prediction within a sequence putative
splice sites are preprocessed using position specific score matrices.
By increasing the cutoff level of these matrices you may prevent false
splice sites to be detected as putative alternative isoform or cryptic
sites. However, high stringency matrices (high cutoff) will not detect
weak alternative isoform or cryptic splice sites. For further information
refer to section evaluation.
Wang M. and Marín A. 2006.
Characterization and Prediction of Alternative Splice Sites. Gene
To analyse single sequences only please use ASSP. The standard version of ASSP produces both a tabular and graphical output.